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You are here: Home / Archives for Manish Butte

Manish Butte

DNA damage and transcriptional regulation in iPSC-derived neurons from Ataxia Telangiectasia patients.

August 8, 2020 By Manish Butte

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DNA damage and transcriptional regulation in iPSC-derived neurons from Ataxia Telangiectasia patients.

Sci Rep. 2019 01 24;9(1):651

Authors: Corti A, Sota R, Dugo M, Calogero RA, Terragni B, Mantegazza M, Franceschetti S, Restelli M, Gasparini P, Lecis D, Chrzanowska KH, Delia D

Abstract
Ataxia Telangiectasia (A-T) is neurodegenerative syndrome caused by inherited mutations inactivating the ATM kinase, a master regulator of the DNA damage response (DDR). What makes neurons vulnerable to ATM loss remains unclear. In this study we assessed on human iPSC-derived neurons whether the abnormal accumulation of DNA-Topoisomerase 1 adducts (Top1ccs) found in A-T impairs transcription elongation, thus favoring neurodegeneration. Furthermore, whether neuronal activity-induced immediate early genes (IEGs), a process involving the formation of DNA breaks, is affected by ATM deficiency. We found that Top1cc trapping by CPT induces an ATM-dependent DDR as well as an ATM-independent induction of IEGs and repression especially of long genes. As revealed by nascent RNA sequencing, transcriptional elongation and recovery were found to proceed with the same rate, irrespective of gene length and ATM status. Neuronal activity induced by glutamate receptors stimulation, or membrane depolarization with KCl, triggered a DDR and expression of IEGs, the latter independent of ATM. In unperturbed A-T neurons a set of genes (FN1, DCN, RASGRF1, FZD1, EOMES, SHH, NR2E1) implicated in the development, maintenance and physiology of central nervous system was specifically downregulated, underscoring their potential involvement in the neurodegenerative process in A-T patients.

PMID: 30679601 [PubMed – indexed for MEDLINE]

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Highly sensitive optoelectrical biosensor for multiplex allergy diagnosis.

August 7, 2020 By Manish Butte

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Highly sensitive optoelectrical biosensor for multiplex allergy diagnosis.

Biosens Bioelectron. 2020 Jul 15;166:112438

Authors: Mas S, Badran AA, Juárez MJ, Fernández de Rojas DH, Morais S, Maquieira Á

Abstract
Compact multiplexed biosensors systems hold great potential for diagnosis of diseases where the detection of multiple biomarkers is required. Hypersensitivity Immunoglobulin E mediated syndromes are primary immunodeficiency disorders associated with sensitization to allergens. Assessing immunoglobulin E (IgE) sensitization to allergens is an important strategy for allergy diagnosis. Here, we report for the first time a reliable, flexible and cost-effective optoelectrical biosensor system for the simultaneous determination of total and allergen-specific IgE and IgG, antibodies using an immunogold-silver signal amplification method. The biosensor was constructed on a regular digital versatile disc (DVD) to immobilize a panel of 12 allergen extracts or pure proteins in microarray format, as a proof of concept. The multiplexed biosensor showed a limit of detection of 0.26 IU/mL (624 pg/mL) and 14 ng/mL for IgE and IgG antibodies, respectively. The system was successfully applied in a cohort of 127 human serum samples, showing good sensitivity (97.6%) as well as specificity (85.7%), and an excellent area under the curve (AUC) value was found at 0.977 (confidence interval, CI 0.957 to 0.990) as compared and validated with a reference clinical immunofluorescence assay, confirming an excellent correlation between both techniques. The multiplex biosensor system with on-demand panel composition can be used fully autonomously in clinical or mobile laboratory settings without the need for any additional medical equipment, with which could make it suitable for massive allergy screening campaigns to better define sensitization profiles.

PMID: 32755808 [PubMed – as supplied by publisher]

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Driving towards Precision Medicine for angioedema without wheals.

August 7, 2020 By Manish Butte

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Driving towards Precision Medicine for angioedema without wheals.

J Autoimmun. 2019 11;104:102312

Authors: Germenis AE, Cicardi M

Abstract
Evidence accumulated over the last two decades indicates that recurrent angioedema without wheals constitutes a diverse family of disorders with a much higher complexity than was previously regarded. Indicatively, during the last two years, novel variants of three genes other than SERPING1 and F12 have been identified in association with hereditary angioedema. Most interestingly, functional studies of at least one of these variants (the variant c.807G > T of ANGPT1 gene) imply the existence of a new disease endotype in which the altered bradykinin metabolism and function does not play a central role. Therefore, using conventional approaches, it seems that the complexity of this disease cannot be sufficiently elucidated and any attempt to interrelate its many diverse aspects seems unrealistic. Similar to other rare and chronic diseases, a Precision Medicine approach, discovering the right target and giving “the right drug, for the right patient, at the right time, every time” seems the optimal future practice. Herein, we review recent data challenging and dictating the need for a switch of angioedema research into high-throughput approaches and we present the expected advantages for better understanding of the disease and patients management.

PMID: 31402201 [PubMed – indexed for MEDLINE]

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Primary immunodeficiencies: novel genes and unusual presentations.

August 6, 2020 By Manish Butte

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Primary immunodeficiencies: novel genes and unusual presentations.

Hematology Am Soc Hematol Educ Program. 2019 12 06;2019(1):443-448

Authors: Notarangelo LD, Uzel G, Rao VK

Abstract
Recent advances in genomics have greatly expanded the spectrum of primary immune deficiencies (PIDs). Along with the identification of pathogenic variants in novel genes, distinct phenotypes have been associated with different variants in the same gene. Although PIDs have been historically defined based on increased susceptibility to infections, immune dysregulation has emerged as a frequent and in some cases, predominant phenotype. Autoimmune cytopenias with onset in childhood, lasting longer than 12 months, and affecting multiple lineages should raise the suspicion of a possible PID with monogenic origin. Characterization of the various molecular and cellular mechanisms responsible for these unusual manifestations of PIDs, although at times resource intensive, may allow for targeted intervention in many of them.

PMID: 31808899 [PubMed – indexed for MEDLINE]

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ADA2 deficiency due to a novel structural variation in 22q11.1.

August 6, 2020 By Manish Butte

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ADA2 deficiency due to a novel structural variation in 22q11.1.

Clin Genet. 2019 06;95(6):732-733

Authors: Grossi A, Cusano R, Rusmini M, Penco F, Schena F, Podda RA, Caorsi R, Gattorno M, Uva P, Ceccherini I

PMID: 30920658 [PubMed – indexed for MEDLINE]

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Newborn Screening through TREC, TREC/KREC system for Primary Immunodeficiency with limitation of TREC/KREC. Comprehensive review.

August 5, 2020 By Manish Butte

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Newborn Screening through TREC, TREC/KREC system for Primary Immunodeficiency with limitation of TREC/KREC. Comprehensive review.

Antiinflamm Antiallergy Agents Med Chem. 2020 Jul 30;:

Authors: Shinwari K, Bolkov M, Tuzankina IA, Chereshnev VA

Abstract
INTRODUCTION: Newborn screening (NBS) by quantifying T cell receptor excision circles (TRECs) and Kappa receptor excision circles in neonatal dried blood spots (DBS) enables early diagnosis of different types of primary immune deficiencies. Global newborn screening for PID, using an assay to detect T-cell receptor excision circles (TREC) in dried blood spots (DBS), is now being performed in all states in the United States. In this review, we discuss the development and outcomes of TREC, TREC/KREC combines screening, and continued challenges to implementation.
OBJECTIVE: To review the diagnostic performance of published articles for TREC and TREC/ KREC based NBS for PID and its different types.
METHODS: Different research resources were used to get an approach for the published data of TREС and KREC based NBS for PID like PubMed, Scopus, Google Scholar, Research gate EMBASE. We extracted TREC and KREC screening Publisher with years of publication, content and cut-off values, and a number of retests, repeat DBS, and referrals from the different published pilot, pilot cohort, Case series, and cohort studies.
RESULTS: We included the results of TREC, combine TREC/KREC system based NBS screening from different research articles,and divided these results between the Pilot studies, case series, and cohort. For each of these studies, different parameter data are excluded from different articles. Thirteen studies were included, re-confirming 89 known SCID cases in case series and reporting 53 new SCID cases in 3.15 million newborns. Individual TREC contents in all SCID patients were <25 TRECs/μl (except in those evaluated with the New York State assay).
CONCLUSION: TREC and KREC sensitivity for typical SCID and other types of PID was100 %. It shows its importance and anticipating the significance of implementation in different undeveloped and developed countries in the NBS program in upcoming years. Data adapting the screening algorithm for pre-term/ill infants reduce the amount of false-positive test results.

PMID: 32748762 [PubMed – as supplied by publisher]

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Rituximab and antimetabolite treatment of granulomatous and lymphocytic interstitial lung disease in common variable immunodeficiency.

August 4, 2020 By Manish Butte

Rituximab and antimetabolite treatment of granulomatous and lymphocytic interstitial lung disease in common variable immunodeficiency.

J Allergy Clin Immunol. 2020 Jul 31;:

Authors: Verbsky JW, Hintermeyer MK, Simpson PM, Feng M, Barbeau J, Rao N, Cool CD, Sosa-Lozano LA, Baruah D, Hammelev E, Busalacchi A, Rymaszewski A, Woodliff J, Chen S, Bausch-Jurken M, Routes JM

Abstract
BACKGROUND: Granulomatous and lymphocytic interstitial lung disease (GLILD) is a life-threatening complication in patients with CVID, but the optimal treatment is unknown.
OBJECTIVE: Determine if rituximab with azathioprine or mycophenolate mofetil improves the HRCT of the chest and/or PFTs in patients with CVID and GLILD.
METHODS: A retrospective chart review was performed of clinical and laboratory data in 39 patients with CVID and GLILD who completed immunosuppressive therapy. Chest HRCT scans, performed prior to therapy and after the conclusion of therapy, were blinded, randomized, and scored independently by two radiologists. Differences between pre- and post-treatment HRCT scores, PFTs and lymphocyte subsets were analyzed. Whole exome sequencing was performed on all patients.
RESULTS: Immunosuppressive therapy improved CT scores (p<0.0001), FVC (p=0.0017), FEV1 (p=0.037), TLC (p=0.013) but not DLCO (p=0.12). Nine patients relapsed and six completed re-treatment, and 5/6 (83%) of these patients had improved HRCT scores (p=0.063). Relapse was associated with an increased number of B cells (p=0.016) and activated CD4 T cells (p=0.016). Four (10%) patients had pneumonia on active treatment, and 2 (5%) patients died after completion of therapy. Eight (21%) patients had a damaging mutation in a gene known to predispose (TNFRSF13B, n=3) or cause a CVID-like PID (CTLA4, n=2; KMT2D, n=2; BIRC4, n=1). Immunosuppression improved the HRCT scores in patients with (p=0.0078) and without (p<0.0001) a damaging mutation.
CONCLUSIONS: Immunosuppressive therapy improved the radiographic abnormalities and pulmonary function of patients with GLILD. A majority of patients had sustained remissions.

PMID: 32745555 [PubMed – as supplied by publisher]

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The clinical implications of selective IgA deficiency.

August 4, 2020 By Manish Butte

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The clinical implications of selective IgA deficiency.

J Transl Autoimmun. 2019 Dec;2:100025

Authors: Swain S, Selmi C, Gershwin ME, Teuber SS

Abstract
Selective IgA deficiency (SIgAD) is the most common primary immunodeficiency but does not always result in clinical disease. This may in part be due to the definition based on serum IgA, while most IgA is secreted at mucosal surfaces, not amenable to measurement. Clinical complications include increased risk of sinopulmonary infections with bacteria and viruses, gastrointestinal infections with a predilection for Giardia lamblia, a myriad of autoimmune diseases including systemic lupus erythematosus, hyper- and hypo-thyroidism, Type 1 diabetes, celiac disease, and rarely, malignancy. SIgAD must be differentiated from IgA deficiency that may be seen with IgG2 or IgG4 deficiency, specific antibody deficiency, or as an early manifestation prior to a diagnosis of common variable immunodeficiency. Secondary IgA deficiency is increasingly recognized and may be due to medications such as anti-epileptics, or antibiotics with disruption of the microbiome which can influence IgA levels, infections or malignancies. Patients with SIgAD should be monitored at regular intervals and educated to be aware of particular complications. There is a rare chance of development of anti-IgA IgE antibodies in patients with complete deficiency, which can result in anaphylaxis if blood products with IgA are administered. Prophylactic antibiotics may be indicated in some cases, and very rarely, supplemental IgG infusions.

PMID: 32743511 [PubMed]

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The Contact Activation System: Problems and Paradoxes for Cardiac Anesthesiologists.

August 4, 2020 By Manish Butte

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The Contact Activation System: Problems and Paradoxes for Cardiac Anesthesiologists.

Anesth Analg. 2020 07;131(1):152-154

Authors: Sniecinski RM, Levy JH

PMID: 32541589 [PubMed – indexed for MEDLINE]

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An update on X-Linked agammaglobulinaemia: clinical manifestations and management.

August 4, 2020 By Manish Butte

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An update on X-Linked agammaglobulinaemia: clinical manifestations and management.

Curr Opin Allergy Clin Immunol. 2019 12;19(6):571-577

Authors: Shillitoe BMJ, Gennery AR

Abstract
PURPOSE OF REVIEW: X-linked agammaglobulinaemia (XLA) is a congenital defect of development of B lymphocytes leading to agammaglobulinaemia. It was one of the first primary immunodeficiencies described, but treatment has remained relatively unchanged over the last 60 years. This summary aims to outline the current outcomes, treatments and future research areas for XLA.
RECENT FINDINGS: Immunoglobulin therapy lacks IgA and IgM, placing patients at theoretical risk of experiencing recurrent respiratory tract infections and developing bronchiectasis despite best current therapy. Recent cohort studies from Italy and the USA conform that bronchiectasis remains a major burden for this group despite best current efforts. However, gene therapy offers a potential cure for these patients with proven proof of concept murine models.
SUMMARY: The potential limitations of current immunoglobulin therapy appear to be confirmed by recent cohort studies, and therefore further work in the development of gene therapy is warranted. Until this is available, clinicians should strive to reduce the diagnostic delay, regularly monitor for lung disease and individualize target immunoglobulin doses to reduce infection rates for their patients.

PMID: 31464718 [PubMed – indexed for MEDLINE]

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